PPGR - Gene Detail

Basic Information

Gene ID	JhiChr07G10781.g View in Genome Browser
Position	chr7:9350054-9352465 (+) 2411bp
Gene Type	gene
Gene Description (Protein Product)	Pseudouridine synthase
Organism	Juglans hindsii
Also AS	AT3G04820

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JhiChr09G10015.g Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1

JhiChr15G11558.g H ACA ribonucleoprotein complex subunit 2-like

JhiChr12G10037.g U3 small nucleolar RNA-associated protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000154	rRNA modification	BP
GO:0000455	enzyme-directed rRNA pseudouridine synthesis	BP
GO:0001522	pseudouridine synthesis	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005730	nucleolus	CC
GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	CC
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006399	tRNA metabolic process	BP
GO:0006400	tRNA modification	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008033	tRNA processing	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009451	RNA modification	BP
GO:0009982	pseudouridine synthase activity	MF
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016073	snRNA metabolic process	BP
GO:0016556	mRNA modification	BP
GO:0016853	isomerase activity	MF
GO:0016866	intramolecular transferase activity	MF
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0031118	rRNA pseudouridine synthesis	BP
GO:0031119	tRNA pseudouridine synthesis	BP
GO:0031120	snRNA pseudouridine synthesis	BP
GO:0031429	box H/ACA snoRNP complex	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032991	protein-containing complex	CC
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0040031	snRNA modification	BP
GO:0042254	ribosome biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044452	obsolete nucleolar part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072588	box H/ACA RNP complex	CC
GO:0090304	nucleic acid metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1902494	catalytic complex	CC
GO:1990481	mRNA pseudouridine synthesis	BP
GO:1990904	ribonucleoprotein complex	CC