PPGR - Gene Detail

Basic Information

Gene ID	JhiChr12G11578.g View in Genome Browser
Position	chr12:20468119-20468509 (-) 390bp
Gene Type	gene
Gene Description (Protein Product)	Small ubiquitin-related modifier
Organism	Juglans hindsii
Also AS	AT5G55160

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JhiChr14G10016.g Zinc finger CCCH domain-containing protein

JhiChr13G11573.g Protein TIC 62, chloroplastic

JhiChr13G11558.g RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA

Regulatory gene

JhiChr01G10819.g dof zinc finger protein

JhiChr01G10967.g basic region leucin zipper

JhiChr01G10985.g Myb-like DNA-binding domain

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.