Basic Information
Gene ID
JhiChr13G11420.g
Position
chr13:6792256-6800659 (-)
8403bp
Gene Type
gene
Gene Description (Protein Product)
repressing transcription factor binding
Organism
Also AS AT5G58610

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JhiChr13G11689.g methyl-CpG-binding domain-containing protein
JhiChr13G11624.g methyl-CpG-binding domain-containing protein
JhiChr14G10111.g Belongs to the peptidase A1 family
Regulatory gene
JhiChr01G10098.g AP2-like ethylene-responsive transcription factor
JhiChr01G10507.g AP2-like ethylene-responsive transcription factor
JhiChr01G10727.g Transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0000118 histone deacetylase complex CC
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001103 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003678 DNA helicase activity MF
GO:0003682 chromatin binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003712 transcription coregulator activity MF
GO:0003714 transcription corepressor activity MF
GO:0003824 catalytic activity MF
GO:0004003 DNA helicase activity MF
GO:0004386 helicase activity MF
GO:0004407 histone deacetylase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0005813 centrosome CC
GO:0005815 microtubule organizing center CC
GO:0005856 cytoskeleton CC
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006476 protein deacetylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008026 helicase activity MF
GO:0008094 ATP-dependent activity, acting on DNA MF
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016462 pyrophosphatase activity MF
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016575 histone deacetylation BP
GO:0016581 NuRD complex CC
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017053 transcription repressor complex CC
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019213 deacetylase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0030334 regulation of cell migration BP
GO:0030336 negative regulation of cell migration BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032392 DNA geometric change BP
GO:0032508 DNA duplex unwinding BP
GO:0032879 regulation of localization BP
GO:0032991 protein-containing complex CC
GO:0033558 protein lysine deacetylase activity MF
GO:0035064 methylated histone binding MF
GO:0035601 protein deacylation BP
GO:0036211 protein modification process BP
GO:0040012 regulation of locomotion BP
GO:0040013 negative regulation of locomotion BP
GO:0042393 histone binding MF
GO:0042623 ATP hydrolysis activity MF
GO:0042826 histone deacetylase binding MF
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043565 sequence-specific DNA binding MF
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051270 obsolete regulation of cellular component movement BP
GO:0051271 obsolete negative regulation of cellular component movement BP
GO:0051276 chromosome organization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070035 obsolete purine NTP-dependent helicase activity MF
GO:0070491 DNA-binding transcription factor binding MF
GO:0070577 lysine-acetylated histone binding MF
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090545 CHD-type complex CC
GO:0090568 transcription repressor complex CC
GO:0097159 organic cyclic compound binding MF
GO:0098732 macromolecule deacylation BP
GO:0140030 modification-dependent protein binding MF
GO:0140033 acetylation-dependent protein binding MF
GO:0140034 methylation-dependent protein binding MF
GO:0140096 catalytic activity, acting on a protein MF
GO:0140097 catalytic activity, acting on DNA MF
GO:0140110 transcription regulator activity MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1903756 obsolete chromatin organization involved in regulation of transcription BP
GO:1903758 obsolete chromatin organization involved in negative regulation of transcription BP
GO:1904949 ATPase complex CC
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000145 regulation of cell motility BP
GO:2000146 negative regulation of cell motility BP
GO:2001141 regulation of RNA biosynthetic process BP