Basic Information
Gene ID
JhiChr13G12047.g
Position
chr13:15424837-15425474 (-)
637bp
Gene Type
gene
Gene Description (Protein Product)
mRNA-decapping enzyme-like
Organism
Also AS AT1G08370

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JhiChr16G10594.g U6 snRNA-associated Sm-like protein
JhiChr14G11559.g Exosome complex
JhiChr15G11191.g Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Regulatory gene
JhiChr01G10098.g AP2-like ethylene-responsive transcription factor
JhiChr01G10507.g AP2-like ethylene-responsive transcription factor
JhiChr01G10727.g Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.