Basic Information
Gene ID
JhiChr16G10020.g
Position
chr16:256984-260793 (+)
3809bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS AT5G64270

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JhiChr16G11118.g pre-mRNA-splicing factor SPF27 homolog
JhiChr16G11423.g 116 kDa U5 small nuclear ribonucleoprotein
JhiChr16G10594.g U6 snRNA-associated Sm-like protein
Regulatory gene
JhiChr05G10706.g Protein BASIC PENTACYSTEINE4-like
JhiChr06G10857.g Protein BASIC PENTACYSTEINE2-like
JhiChr06G10933.g Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.