Basic Information
Gene ID
JhiChr16G10924.g
Position
chr16:12638104-12640231 (-)
2127bp
Gene Type
gene
Gene Description (Protein Product)
Coiled-coil domain-containing protein
Organism
Also AS AT3G05070

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JhiChr16G11423.g 116 kDa U5 small nuclear ribonucleoprotein
JhiChr16G11118.g pre-mRNA-splicing factor SPF27 homolog
JhiChr16G11417.g G-patch domain
Regulatory gene
JhiChr01G10098.g AP2-like ethylene-responsive transcription factor
JhiChr01G10507.g AP2-like ethylene-responsive transcription factor
JhiChr01G10515.g Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.