Basic Information
Gene ID
JmaChr05G12920.g
Position
chr5:34792955-34797215 (+)
4260bp
Gene Type
gene
Gene Description (Protein Product)
Ubiquitin-like superfamily protein
Organism
Also AS AT1G68185

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JmaChr12G10047.g rnps1,sr45
JmaChr15G11420.g Nuclear-pore
JmaChr16G10871.g Nuclear-pore
Regulatory gene
JmaChr01G10033.g dof zinc finger protein
JmaChr01G10745.g Dof zinc finger protein
JmaChr01G11650.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.