PPGR - Gene Detail

Basic Information

Gene ID	JmaChr07G10078.g View in Genome Browser
Position	chr7:682030-689503 (+) 7473bp
Gene Type	gene
Gene Description (Protein Product)	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
Organism	Juglans mandshurica
Also AS	AT3G04870

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JmaChr09G10540.g Lycopene beta cyclase

JmaChr09G10265.g Prolycopene isomerase

JmaChr09G12231.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006629	lipid metabolic process	BP
GO:0006720	isoprenoid metabolic process	BP
GO:0006721	terpenoid metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008299	isoprenoid biosynthetic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009509	chromoplast	CC
GO:0009526	plastid envelope	CC
GO:0009536	plastid	CC
GO:0009941	chloroplast envelope	CC
GO:0009987	cellular process	BP
GO:0016108	tetraterpenoid metabolic process	BP
GO:0016109	tetraterpenoid biosynthetic process	BP
GO:0016114	terpenoid biosynthetic process	BP
GO:0016116	carotenoid metabolic process	BP
GO:0016117	carotenoid biosynthetic process	BP
GO:0016119	carotene metabolic process	BP
GO:0016120	carotene biosynthetic process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	MF
GO:0016635	oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	MF
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0042214	terpene metabolic process	BP
GO:0042440	pigment metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046148	pigment biosynthetic process	BP
GO:0046246	terpene biosynthetic process	BP
GO:0052886	9,9'-dicis-carotene:quinone oxidoreductase activity	MF
GO:0052889	9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901175	lycopene metabolic process	BP
GO:1901177	lycopene biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00906	Carotenoid biosynthesis	-