PPGR - Gene Detail

Basic Information

Gene ID	JmaChr09G11720.g View in Genome Browser
Position	chr9:16712926-16713645 (+) 719bp
Gene Type	gene
Gene Description (Protein Product)	DNA-directed RNA polymerase III subunit
Organism	Juglans mandshurica
Also AS	AT5G23710

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JmaChr14G10360.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

JmaChr10G10230.g DNA-directed RNA

JmaChr11G12728.g DNA-directed RNA polymerases I and III subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0001817	regulation of cytokine production	BP
GO:0001819	positive regulation of cytokine production	BP
GO:0002682	regulation of immune system process	BP
GO:0002684	positive regulation of immune system process	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003690	double-stranded DNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005666	RNA polymerase III complex	CC
GO:0008150	biological_process	BP
GO:0030880	RNA polymerase complex	CC
GO:0031347	regulation of defense response	BP
GO:0031349	positive regulation of defense response	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032479	regulation of type I interferon production	BP
GO:0032481	positive regulation of type I interferon production	BP
GO:0032648	regulation of interferon-beta production	BP
GO:0032728	positive regulation of interferon-beta production	BP
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0045088	regulation of innate immune response	BP
GO:0045089	positive regulation of innate immune response	BP
GO:0048518	positive regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0050776	regulation of immune response	BP
GO:0050778	positive regulation of immune response	BP
GO:0050789	regulation of biological process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051240	positive regulation of multicellular organismal process	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0080134	regulation of response to stress	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC

KEGG Term	Name	Description
map03020	RNA polymerase	-