Basic Information
Gene ID
JmaChr10G10116.g
Position
chr10:979630-981169 (-)
1539bp
Gene Type
gene
Gene Description (Protein Product)
TRAF-type zinc finger
Organism
Also AS AT3G11950

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JmaChr12G10787.g Belongs to the FPP GGPP synthase family
JmaChr11G10578.g Geranylgeranyl diphosphate reductase
JmaChr11G10579.g Geranylgeranyl diphosphate reductase
Regulatory gene
JmaChr01G10033.g dof zinc finger protein
JmaChr01G10371.g Zinc finger protein
JmaChr01G10547.g ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00130 Ubiquinone and other terpenoid-quinone biosynthesis Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.