PPGR - Gene Detail

Basic Information

Gene ID	JmaChr12G11315.g View in Genome Browser
Position	chr12:18244558-18257773 (+) 13215bp
Gene Type	gene
Gene Description (Protein Product)	Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules
Organism	Juglans mandshurica
Also AS	AT4G23460

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JmaChr13G10755.g Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

JmaChr14G10153.g Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

JmaChr14G10876.g Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome

Regulatory gene

JmaChr05G10749.g Protein BASIC PENTACYSTEINE4-like

JmaChr05G11688.g Protein BASIC PENTACYSTEINE2-like

JmaChr06G10953.g Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0009506	plasmodesma	CC
GO:0016020	membrane	CC
GO:0030054	cell junction	CC
GO:0044464	obsolete cell part	CC
GO:0055044	symplast	CC
GO:0071944	cell periphery	CC