Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
JmaChr13G10295.g
View in Genome Browser
Position
chr13:2590817-2593772 (+)
2955bp
Gene Type
gene
Gene Description (Protein Product)
Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Organism
Juglans mandshurica
Also AS AT4G01710

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JmaChr16G10134.g cytochrome c oxidase assembly protein
JmaChr14G10877.g Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome
JmaChr14G10878.g Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome
Regulatory gene
JmaChr01G10033.g dof zinc finger protein
JmaChr01G10102.g Homeobox-leucine zipper protein
JmaChr01G10149.g Homeobox-leucine zipper protein GLABRA

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0003674 molecular_function MF
GO:0003779 actin binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005856 cytoskeleton CC
GO:0005885 Arp2/3 protein complex CC
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007015 actin filament organization BP
GO:0007163 establishment or maintenance of cell polarity BP
GO:0007275 multicellular organism development BP
GO:0007399 nervous system development BP
GO:0007417 central nervous system development BP
GO:0007420 brain development BP
GO:0008064 regulation of actin polymerization or depolymerization BP
GO:0008092 cytoskeletal protein binding MF
GO:0008150 biological_process BP
GO:0008154 actin polymerization or depolymerization BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009825 multidimensional cell growth BP
GO:0009888 tissue development BP
GO:0009987 cellular process BP
GO:0010026 trichome differentiation BP
GO:0010090 trichome morphogenesis BP
GO:0010638 positive regulation of organelle organization BP
GO:0012505 endomembrane system CC
GO:0014812 muscle cell migration BP
GO:0014909 smooth muscle cell migration BP
GO:0015629 actin cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016477 cell migration BP
GO:0021761 limbic system development BP
GO:0021769 orbitofrontal cortex development BP
GO:0022607 cellular component assembly BP
GO:0030011 maintenance of cell polarity BP
GO:0030029 actin filament-based process BP
GO:0030030 cell projection organization BP
GO:0030036 actin cytoskeleton organization BP
GO:0030041 actin filament polymerization BP
GO:0030154 cell differentiation BP
GO:0030424 axon CC
GO:0030426 growth cone CC
GO:0030427 site of polarized growth CC
GO:0030832 regulation of actin filament length BP
GO:0030833 regulation of actin filament polymerization BP
GO:0030838 positive regulation of actin filament polymerization BP
GO:0030900 forebrain development BP
GO:0031334 positive regulation of protein-containing complex assembly BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032271 regulation of protein polymerization BP
GO:0032273 positive regulation of protein polymerization BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032535 regulation of cellular component size BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0032989 cellular component morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0033267 obsolete axon part CC
GO:0034314 Arp2/3 complex-mediated actin nucleation BP
GO:0034622 protein-containing complex assembly BP
GO:0040007 growth BP
GO:0040011 locomotion BP
GO:0042995 cell projection CC
GO:0043005 neuron projection CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044463 obsolete cell projection part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045010 actin nucleation BP
GO:0048468 cell development BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0048870 cell motility BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051015 actin filament binding MF
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051179 localization BP
GO:0051258 protein polymerization BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051495 positive regulation of cytoskeleton organization BP
GO:0051639 actin filament network formation BP
GO:0051674 localization of cell BP
GO:0060322 head development BP
GO:0061842 microtubule organizing center localization BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090066 regulation of anatomical structure size BP
GO:0090558 plant epidermis development BP
GO:0090626 plant epidermis morphogenesis BP
GO:0097435 supramolecular fiber organization BP
GO:0097458 obsolete neuron part CC
GO:0097581 lamellipodium organization BP
GO:0097708 intracellular vesicle CC
GO:0110053 regulation of actin filament organization BP
GO:0120025 plasma membrane bounded cell projection CC
GO:0120036 plasma membrane bounded cell projection organization BP
GO:0120038 obsolete plasma membrane bounded cell projection part CC
GO:0150034 distal axon CC
GO:1902903 regulation of supramolecular fiber organization BP
GO:1902905 positive regulation of supramolecular fiber organization BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.