Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
JmaChr13G10978.g
View in Genome Browser
Position
chr13:8689339-8691027 (-)
1688bp
Gene Type
gene
Gene Description (Protein Product)
Pentatricopeptide repeat-containing protein
Organism
Juglans mandshurica
Also AS AT4G11690

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JmaChr15G12112.g Pentatricopeptide repeat-containing protein
JmaChr14G11084.g Pentatricopeptide repeat-containing protein At2g22410
JmaChr16G11008.g ATP-dependent RNA helicase
Regulatory gene
JmaChr01G10242.g Tesmin/TSO1-like CXC domain
JmaChr01G10371.g Zinc finger protein
JmaChr01G10445.g Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000959 mitochondrial RNA metabolic process BP
GO:0001101 response to acid chemical BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003824 catalytic activity MF
GO:0004518 nuclease activity MF
GO:0004519 endonuclease activity MF
GO:0005488 binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009451 RNA modification BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009737 response to abscisic acid BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016556 mRNA modification BP
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0033993 response to lipid BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042221 response to chemical BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0050896 response to stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0080156 mitochondrial mRNA modification BP
GO:0090304 nucleic acid metabolic process BP
GO:0090305 nucleic acid phosphodiester bond hydrolysis BP
GO:0097159 organic cyclic compound binding MF
GO:0097305 response to alcohol BP
GO:1900864 mitochondrial RNA modification BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901700 response to oxygen-containing compound BP