PPGR - Gene Detail

Basic Information

Gene ID	JmaChr16G10224.g View in Genome Browser
Position	chr16:2454193-2460617 (+) 6424bp
Gene Type	gene
Gene Description (Protein Product)	Protein ROOT INITIATION DEFECTIVE
Organism	Juglans mandshurica
Also AS	AT3G49180

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

JmaChr16G11066.g WD and tetratricopeptide repeats protein

JmaChr16G10848.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

JmaChr16G10849.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Regulatory gene

JmaChr01G10033.g dof zinc finger protein

JmaChr01G10102.g Homeobox-leucine zipper protein

JmaChr01G10149.g Homeobox-leucine zipper protein GLABRA

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000151	ubiquitin ligase complex	CC
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0008150	biological_process	BP
GO:0031461	cullin-RING ubiquitin ligase complex	CC
GO:0032991	protein-containing complex	CC
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0048509	regulation of meristem development	BP
GO:0048519	negative regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0051093	negative regulation of developmental process	BP
GO:0065007	biological regulation	BP
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	CC
GO:1902183	regulation of shoot apical meristem development	BP
GO:1902184	negative regulation of shoot apical meristem development	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC