PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	JmaChr16G10434.g View in Genome Browser
Position	chr16:5359428-5363237 (+) 3809bp
Gene Type	gene
Gene Description (Protein Product)	Splicing factor 3B subunit
Organism	Juglans mandshurica
Also AS	AT5G64270

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	JmaChr16G11322.g 116 kDa U5 small nuclear ribonucleoprotein JmaChr16G11022.g pre-mRNA-splicing factor SPF27 homolog JmaChr16G10539.g U6 snRNA-associated Sm-like protein
Regulatory gene	JmaChr05G10749.g Protein BASIC PENTACYSTEINE4-like JmaChr05G11688.g Protein BASIC PENTACYSTEINE2-like JmaChr06G10953.g Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.