Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Juni_Chr1.105_Juni_Chr1.104.g
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Position
Chr1:899361-901671 (-)
2310bp
Gene Type
gene
Gene Description (Protein Product)
"The light-harvesting complex (LHC) functions as a light receptor
Organism
Juglans nigra
Also AS AT4G10340

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Juni_Chr1.3266.g The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Juni_Chr7.3532.g The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Juni_Chr2.2621.g Photosystem I reaction center subunit V
Regulatory gene
Juni_Chr1.1382.g transcription factor
Juni_Chr1.1689.g Transcription factor CPC-like
Juni_Chr1.1803.g Encoded by

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006091 generation of precursor metabolites and energy BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009314 response to radiation BP
GO:0009416 response to light stimulus BP
GO:0009503 thylakoid light-harvesting complex CC
GO:0009507 chloroplast CC
GO:0009517 PSII associated light-harvesting complex II CC
GO:0009521 photosystem CC
GO:0009523 photosystem II CC
GO:0009526 plastid envelope CC
GO:0009532 plastid stroma CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009579 thylakoid CC
GO:0009628 response to abiotic stimulus BP
GO:0009637 response to blue light BP
GO:0009639 response to red or far red light BP
GO:0009765 photosynthesis, light harvesting BP
GO:0009768 photosynthesis, light harvesting in photosystem I BP
GO:0009783 photosystem II antenna complex CC
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0010114 response to red light BP
GO:0010196 nonphotochemical quenching BP
GO:0010207 photosystem II assembly BP
GO:0010218 response to far red light BP
GO:0010287 plastoglobule CC
GO:0015979 photosynthesis BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016168 chlorophyll binding MF
GO:0019684 photosynthesis, light reaction BP
GO:0019904 protein domain specific binding MF
GO:0022607 cellular component assembly BP
GO:0030076 light-harvesting complex CC
GO:0031409 pigment binding MF
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0031976 plastid thylakoid CC
GO:0031984 organelle subcompartment CC
GO:0032991 protein-containing complex CC
GO:0034357 photosynthetic membrane CC
GO:0034622 protein-containing complex assembly BP
GO:0042651 thylakoid membrane CC
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046906 tetrapyrrole binding MF
GO:0048037 obsolete cofactor binding MF
GO:0050896 response to stimulus BP
GO:0055035 plastid thylakoid membrane CC
GO:0065003 protein-containing complex assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:0098796 membrane protein complex CC
GO:0098807 chloroplast thylakoid membrane protein complex CC
GO:1901363 heterocyclic compound binding MF
GO:1990066 energy quenching BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00196 Photosynthesis - antenna proteins The chlorophyll-binding subunits of photosystems I and II are internal antenna light-harvesting proteins of oxygenic photosynthesis. The antenna proteins that exist in phycobilisomes in cyanobacteria and light-harvesting chlorophyll protein complexes in green plants act as peripheral antenna systems, enabling more efficient absorption of light energy.