Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Juni_Chr16.1718.g
View in Genome Browser
Position
Chr16:23998534-24008261 (+)
9727bp
Gene Type
gene
Gene Description (Protein Product)
Transcription factor tfiiib component
Organism
Juglans nigra
Also AS AT4G39160

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Juni_Chr8.270.g Transcription factor IIIB 50 kDa
Juni_Chr4.1672.g Transcription factor IIIB 50 kDa
Juni_Chr3.1585.g DNA-directed RNA polymerase III subunit
Regulatory gene
Juni_Chr1.150.g B3 domain-containing protein
Juni_Chr1.1563.g B3 domain-containing transcription factor
Juni_Chr1.197.g ZF-HD protein dimerisation region
Target gene
Juni_Chr1.1.g CarD-like/TRCF domain
Juni_Chr1.1002.g Pentatricopeptide repeat-containing protein
Juni_Chr1.1013.g two-component response regulator

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000126 transcription factor TFIIIB complex CC
GO:0001025 RNA polymerase III general transcription initiation factor binding MF
GO:0001156 TFIIIC-class transcription factor complex binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005667 transcription regulator complex CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006351 DNA-templated transcription BP
GO:0006352 DNA-templated transcription initiation BP
GO:0006383 transcription by RNA polymerase III BP
GO:0006384 transcription initiation at RNA polymerase III promoter BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0022607 cellular component assembly BP
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044798 transcription regulator complex CC
GO:0046483 heterocycle metabolic process BP
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0070897 transcription preinitiation complex assembly BP
GO:0070898 RNA polymerase III preinitiation complex assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0090576 RNA polymerase III transcription regulator complex CC
GO:0097159 organic cyclic compound binding MF
GO:0097659 nucleic acid-templated transcription BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901576 organic substance biosynthetic process BP