PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Juni_Chr3.1686.g View in Genome Browser
Position	Chr3:19366418-19372773 (+) 6355bp
Gene Type	gene
Gene Description (Protein Product)	sphingosine kinase
Organism	Juglans nigra
Also AS	AT4G21540

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Juni_Chr3.605.g Sphingolipid delta(4)-desaturase DES1-like Juni_Chr4.1780.g Sphingolipid delta(4)-desaturase DES1-like Juni_Chr6.117.g Belongs to the sterol desaturase family
Regulatory gene	Juni_Chr11.1944.g Protein BASIC PENTACYSTEINE6-like Juni_Chr13.1575.g SNW SKI-interacting Juni_Chr13.1579.g Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0000287	magnesium ion binding	MF
GO:0000325	plant-type vacuole	CC
GO:0001101	response to acid chemical	BP
GO:0001558	regulation of cell growth	BP
GO:0001727	lipid kinase activity	MF
GO:0001932	regulation of protein phosphorylation	BP
GO:0001934	positive regulation of protein phosphorylation	BP
GO:0001959	regulation of cytokine-mediated signaling pathway	BP
GO:0003376	sphingosine-1-phosphate receptor signaling pathway	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003824	catalytic activity	MF
GO:0004888	transmembrane signaling receptor activity	MF
GO:0004930	G protein-coupled receptor activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005516	calmodulin binding	MF
GO:0005524	ATP binding	MF
GO:0005543	phospholipid binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005829	cytosol	CC
GO:0005886	plasma membrane	CC
GO:0006066	alcohol metabolic process	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006457	protein folding	BP
GO:0006629	lipid metabolic process	BP
GO:0006643	membrane lipid metabolic process	BP
GO:0006665	sphingolipid metabolic process	BP
GO:0006670	sphingosine metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006937	regulation of muscle contraction	BP
GO:0006940	regulation of smooth muscle contraction	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007186	G protein-coupled receptor signaling pathway	BP
GO:0007275	multicellular organism development	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008284	positive regulation of cell population proliferation	BP
GO:0008289	lipid binding	MF
GO:0008481	sphinganine kinase activity	MF
GO:0008610	lipid biosynthetic process	BP
GO:0009056	catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009705	plant-type vacuole membrane	CC
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0009791	post-embryonic development	BP
GO:0009845	seed germination	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009967	positive regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010562	positive regulation of phosphorus metabolic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010646	regulation of cell communication	BP
GO:0010647	positive regulation of cell communication	BP
GO:0010799	regulation of peptidyl-threonine phosphorylation	BP
GO:0010800	positive regulation of peptidyl-threonine phosphorylation	BP
GO:0010803	regulation of tumor necrosis factor-mediated signaling pathway	BP
GO:0010941	regulation of cell death	BP
GO:0016020	membrane	CC
GO:0016042	lipid catabolic process	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0017050	D-erythro-sphingosine kinase activity	MF
GO:0017076	purine nucleotide binding	MF
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019722	calcium-mediated signaling	BP
GO:0019751	polyol metabolic process	BP
GO:0019899	enzyme binding	MF
GO:0019902	phosphatase binding	MF
GO:0019903	protein phosphatase binding	MF
GO:0019932	second-messenger-mediated signaling	BP
GO:0022603	regulation of anatomical structure morphogenesis	BP
GO:0023051	regulation of signaling	BP
GO:0023052	signaling	BP
GO:0023056	positive regulation of signaling	BP
GO:0030148	sphingolipid biosynthetic process	BP
GO:0030149	sphingolipid catabolic process	BP
GO:0030258	lipid modification	BP
GO:0030307	positive regulation of cell growth	BP
GO:0030334	regulation of cell migration	BP
GO:0030335	positive regulation of cell migration	BP
GO:0030554	adenyl nucleotide binding	MF
GO:0031090	organelle membrane	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031396	regulation of protein ubiquitination	BP
GO:0031398	positive regulation of protein ubiquitination	BP
GO:0031399	regulation of protein modification process	BP
GO:0031401	positive regulation of protein modification process	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0032870	cellular response to hormone stimulus	BP
GO:0032879	regulation of localization	BP
GO:0033993	response to lipid	BP
GO:0034311	diol metabolic process	BP
GO:0034312	diol biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035556	intracellular signal transduction	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0038023	signaling receptor activity	MF
GO:0038036	sphingosine-1-phosphate receptor activity	MF
GO:0040008	regulation of growth	BP
GO:0040012	regulation of locomotion	BP
GO:0040017	positive regulation of locomotion	BP
GO:0042127	regulation of cell population proliferation	BP
GO:0042221	response to chemical	BP
GO:0042325	regulation of phosphorylation	BP
GO:0042327	positive regulation of phosphorylation	BP
GO:0042981	regulation of apoptotic process	BP
GO:0043066	negative regulation of apoptotic process	BP
GO:0043067	regulation of programmed cell death	BP
GO:0043069	negative regulation of programmed cell death	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043169	cation binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044057	regulation of system process	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044242	cellular lipid catabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045125	bioactive lipid receptor activity	MF
GO:0045765	regulation of angiogenesis	BP
GO:0045766	positive regulation of angiogenesis	BP
GO:0045787	positive regulation of cell cycle	BP
GO:0045927	positive regulation of growth	BP
GO:0045931	positive regulation of mitotic cell cycle	BP
GO:0045933	positive regulation of muscle contraction	BP
GO:0045937	positive regulation of phosphate metabolic process	BP
GO:0045987	positive regulation of smooth muscle contraction	BP
GO:0046165	alcohol biosynthetic process	BP
GO:0046173	polyol biosynthetic process	BP
GO:0046466	membrane lipid catabolic process	BP
GO:0046467	membrane lipid biosynthetic process	BP
GO:0046512	sphingosine biosynthetic process	BP
GO:0046519	sphingoid metabolic process	BP
GO:0046520	sphingoid biosynthetic process	BP
GO:0046521	sphingoid catabolic process	BP
GO:0046834	lipid phosphorylation	BP
GO:0046872	metal ion binding	MF
GO:0048145	regulation of fibroblast proliferation	BP
GO:0048146	positive regulation of fibroblast proliferation	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051090	regulation of DNA-binding transcription factor activity	BP
GO:0051091	positive regulation of DNA-binding transcription factor activity	BP
GO:0051092	positive regulation of NF-kappaB transcription factor activity	BP
GO:0051094	positive regulation of developmental process	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051240	positive regulation of multicellular organismal process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051270	obsolete regulation of cellular component movement	BP
GO:0051272	obsolete positive regulation of cellular component movement	BP
GO:0051716	cellular response to stimulus	BP
GO:0051721	protein phosphatase 2A binding	MF
GO:0051726	regulation of cell cycle	BP
GO:0060089	molecular transducer activity	MF
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060548	negative regulation of cell death	BP
GO:0060759	regulation of response to cytokine stimulus	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070300	phosphatidic acid binding	MF
GO:0070887	cellular response to chemical stimulus	BP
GO:0071215	cellular response to abscisic acid stimulus	BP
GO:0071229	cellular response to acid chemical	BP
GO:0071310	cellular response to organic substance	BP
GO:0071396	cellular response to lipid	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0080090	regulation of primary metabolic process	BP
GO:0090257	regulation of muscle system process	BP
GO:0090351	seedling development	BP
GO:0090520	sphingolipid mediated signaling pathway	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097164	ammonium ion metabolic process	BP
GO:0097305	response to alcohol	BP
GO:0097306	cellular response to alcohol	BP
GO:0097367	carbohydrate derivative binding	MF
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:1901222	regulation of NIK/NF-kappaB signaling	BP
GO:1901224	positive regulation of NIK/NF-kappaB signaling	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901342	regulation of vasculature development	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1902531	regulation of intracellular signal transduction	BP
GO:1902533	positive regulation of intracellular signal transduction	BP
GO:1903320	regulation of protein modification by small protein conjugation or removal	BP
GO:1903322	positive regulation of protein modification by small protein conjugation or removal	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1904018	positive regulation of vasculature development	BP
GO:2000026	regulation of multicellular organismal development	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000145	regulation of cell motility	BP
GO:2000147	positive regulation of cell motility	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00600	Sphingolipid metabolism	-