PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Juni_Chr3.968.g View in Genome Browser
Position	Chr3:8745276-8747900 (+) 2624bp
Gene Type	gene
Gene Description (Protein Product)	B-cell receptor-associated protein
Organism	Juglans nigra
Also AS	AT5G42570

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Juni_Chr7.444.g B-cell receptor-associated protein Juni_Chr7.2269.g Ammonium transporter Juni_Chr5.9.g and Fe(II)-dependent oxygenase superfamily protein
Regulatory gene	Juni_Chr1.197.g ZF-HD protein dimerisation region Juni_Chr1.243.g Cyclic dof factor Juni_Chr1.255.g Zinc-finger homeodomain protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000139	Golgi membrane	CC
GO:0003674	molecular_function	MF
GO:0005102	signaling receptor binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0005794	Golgi apparatus	CC
GO:0005795	Golgi stack	CC
GO:0005811	lipid droplet	CC
GO:0005886	plasma membrane	CC
GO:0005887	plasma membrane	CC
GO:0006810	transport	BP
GO:0006873	intracellular monoatomic ion homeostasis	BP
GO:0006874	intracellular calcium ion homeostasis	BP
GO:0006875	obsolete intracellular metal ion homeostasis	BP
GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007204	positive regulation of cytosolic calcium ion concentration	BP
GO:0007276	gamete generation	BP
GO:0007283	spermatogenesis	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009894	regulation of catabolic process	BP
GO:0009896	positive regulation of catabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009967	positive regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010646	regulation of cell communication	BP
GO:0010647	positive regulation of cell communication	BP
GO:0010941	regulation of cell death	BP
GO:0010942	positive regulation of cell death	BP
GO:0010950	positive regulation of endopeptidase activity	BP
GO:0010952	positive regulation of peptidase activity	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016192	vesicle-mediated transport	BP
GO:0019222	regulation of metabolic process	BP
GO:0019722	calcium-mediated signaling	BP
GO:0019725	cellular homeostasis	BP
GO:0019932	second-messenger-mediated signaling	BP
GO:0019953	sexual reproduction	BP
GO:0022414	reproductive process	BP
GO:0023051	regulation of signaling	BP
GO:0023052	signaling	BP
GO:0023056	positive regulation of signaling	BP
GO:0030003	intracellular monoatomic cation homeostasis	BP
GO:0030135	coated vesicle	CC
GO:0030136	clathrin-coated vesicle	CC
GO:0030162	regulation of proteolysis	BP
GO:0031090	organelle membrane	CC
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031226	obsolete intrinsic component of plasma membrane	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031329	regulation of cellular catabolic process	BP
GO:0031331	positive regulation of cellular catabolic process	BP
GO:0031410	cytoplasmic vesicle	CC
GO:0031982	vesicle	CC
GO:0031984	organelle subcompartment	CC
GO:0031985	Golgi cisterna	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032386	regulation of intracellular transport	BP
GO:0032388	positive regulation of intracellular transport	BP
GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	BP
GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	BP
GO:0032469	endoplasmic reticulum calcium ion homeostasis	BP
GO:0032471	negative regulation of endoplasmic reticulum calcium ion concentration	BP
GO:0032501	multicellular organismal process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032580	Golgi cisterna membrane	CC
GO:0032879	regulation of localization	BP
GO:0032880	regulation of protein localization	BP
GO:0033036	macromolecule localization	BP
GO:0033157	regulation of intracellular protein transport	BP
GO:0033365	protein localization to organelle	BP
GO:0034613	protein localization	BP
GO:0035556	intracellular signal transduction	BP
GO:0035584	calcium-mediated signaling using intracellular calcium source	BP
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0042176	regulation of protein catabolic process	BP
GO:0042287	MHC protein binding	MF
GO:0042288	MHC class I protein binding	MF
GO:0042592	homeostatic process	BP
GO:0042981	regulation of apoptotic process	BP
GO:0043065	positive regulation of apoptotic process	BP
GO:0043067	regulation of programmed cell death	BP
GO:0043068	positive regulation of programmed cell death	BP
GO:0043085	positive regulation of catalytic activity	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0043281	regulation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044877	protein-containing complex binding	MF
GO:0045732	positive regulation of protein catabolic process	BP
GO:0045862	positive regulation of proteolysis	BP
GO:0046907	intracellular transport	BP
GO:0048193	Golgi vesicle transport	BP
GO:0048232	male gamete generation	BP
GO:0048471	perinuclear region of cytoplasm	CC
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048878	chemical homeostasis	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0050801	monoatomic ion homeostasis	BP
GO:0050896	response to stimulus	BP
GO:0051049	regulation of transport	BP
GO:0051050	positive regulation of transport	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051222	positive regulation of protein transport	BP
GO:0051223	regulation of protein transport	BP
GO:0051234	establishment of localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051345	positive regulation of hydrolase activity	BP
GO:0051480	regulation of cytosolic calcium ion concentration	BP
GO:0051560	mitochondrial calcium ion homeostasis	BP
GO:0051561	positive regulation of mitochondrial calcium ion concentration	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051716	cellular response to stimulus	BP
GO:0052547	regulation of peptidase activity	BP
GO:0052548	regulation of endopeptidase activity	BP
GO:0055065	obsolete metal ion homeostasis	BP
GO:0055074	calcium ion homeostasis	BP
GO:0055080	monoatomic cation homeostasis	BP
GO:0055082	intracellular chemical homeostasis	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060341	regulation of cellular localization	BP
GO:0061136	regulation of proteasomal protein catabolic process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0065009	regulation of molecular function	BP
GO:0070201	regulation of establishment of protein localization	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070861	regulation of protein exit from endoplasmic reticulum	BP
GO:0070863	positive regulation of protein exit from endoplasmic reticulum	BP
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0070973	protein localization to endoplasmic reticulum exit site	BP
GO:0071944	cell periphery	CC
GO:0072503	obsolete cellular divalent inorganic cation homeostasis	BP
GO:0072507	obsolete divalent inorganic cation homeostasis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0080135	regulation of cellular response to stress	BP
GO:0090087	regulation of peptide transport	BP
GO:0090316	positive regulation of intracellular protein transport	BP
GO:0097038	perinuclear endoplasmic reticulum	CC
GO:0097708	intracellular vesicle	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098771	inorganic ion homeostasis	BP
GO:0098791	Golgi apparatus subcompartment	CC
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:1901800	positive regulation of proteasomal protein catabolic process	BP
GO:1902531	regulation of intracellular signal transduction	BP
GO:1902533	positive regulation of intracellular signal transduction	BP
GO:1903050	regulation of proteolysis involved in protein catabolic process	BP
GO:1903052	positive regulation of proteolysis involved in protein catabolic process	BP
GO:1903069	regulation of ER-associated ubiquitin-dependent protein catabolic process	BP
GO:1903071	positive regulation of ER-associated ubiquitin-dependent protein catabolic process	BP
GO:1903362	regulation of protein catabolic process	BP
GO:1903364	positive regulation of protein catabolic process	BP
GO:1903827	regulation of protein localization	BP
GO:1903829	positive regulation of protein localization	BP
GO:1904152	regulation of retrograde protein transport, ER to cytosol	BP
GO:1904154	positive regulation of retrograde protein transport, ER to cytosol	BP
GO:1904292	regulation of ERAD pathway	BP
GO:1904294	positive regulation of ERAD pathway	BP
GO:1904951	positive regulation of establishment of protein localization	BP
GO:1905897	regulation of response to endoplasmic reticulum stress	BP
GO:1905898	positive regulation of response to endoplasmic reticulum stress	BP
GO:2000058	regulation of ubiquitin-dependent protein catabolic process	BP
GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	BP
GO:2000116	regulation of cysteine-type endopeptidase activity	BP
GO:2001056	positive regulation of cysteine-type endopeptidase activity	BP
GO:2001233	regulation of apoptotic signaling pathway	BP
GO:2001235	positive regulation of apoptotic signaling pathway	BP
GO:2001242	regulation of intrinsic apoptotic signaling pathway	BP
GO:2001244	positive regulation of intrinsic apoptotic signaling pathway	BP

KEGG Term	Name	Description
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.