PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Juni_Chr6.1591.g View in Genome Browser
Position	Chr6:26186490-26202903 (-) 16413bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the actin family
Organism	Juglans nigra
Also AS	AT1G18450

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Juni_Chr7.1259.g Chromatin structure-remodeling complex protein

Juni_Chr8.1673.g Transcription initiation factor TFIID subunit

Juni_Chr7.2364.g Chromatin modification-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000123	histone acetyltransferase complex	CC
GO:0000228	nuclear chromosome	CC
GO:0000278	mitotic cell cycle	BP
GO:0000281	mitotic cytokinesis	BP
GO:0000785	chromatin	CC
GO:0000790	chromatin	CC
GO:0000812	Swr1 complex	CC
GO:0000902	cell morphogenesis	BP
GO:0000904	cell morphogenesis involved in differentiation	BP
GO:0000910	cytokinesis	BP
GO:0001654	eye development	BP
GO:0003407	neural retina development	BP
GO:0003674	molecular_function	MF
GO:0003682	chromatin binding	MF
GO:0003712	transcription coregulator activity	MF
GO:0003713	transcription coactivator activity	MF
GO:0005198	structural molecule activity	MF
GO:0005200	structural constituent of cytoskeleton	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005694	chromosome	CC
GO:0005730	nucleolus	CC
GO:0005886	plasma membrane	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006325	chromatin organization	BP
GO:0006333	chromatin organization	BP
GO:0006337	nucleosome disassembly	BP
GO:0006338	chromatin remodeling	BP
GO:0006351	DNA-templated transcription	BP
GO:0006354	DNA-templated transcription elongation	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006368	transcription elongation by RNA polymerase II	BP
GO:0006464	protein modification process	BP
GO:0006473	protein acetylation	BP
GO:0006475	internal protein amino acid acetylation	BP
GO:0006508	proteolysis	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006928	obsolete movement of cell or subcellular component	BP
GO:0006935	chemotaxis	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007049	cell cycle	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007399	nervous system development	BP
GO:0007417	central nervous system development	BP
GO:0007423	sensory organ development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009605	response to external stimulus	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016358	dendrite development	BP
GO:0016514	SWI/SNF complex	CC
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016573	histone acetylation	BP
GO:0016579	protein deubiquitination	BP
GO:0016586	RSC-type complex	CC
GO:0018130	heterocycle biosynthetic process	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018205	peptidyl-lysine modification	BP
GO:0018393	internal peptidyl-lysine acetylation	BP
GO:0018394	peptidyl-lysine acetylation	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019538	protein metabolic process	BP
GO:0021510	spinal cord development	BP
GO:0022008	neurogenesis	BP
GO:0022402	cell cycle process	BP
GO:0022411	cellular component disassembly	BP
GO:0022607	cellular component assembly	BP
GO:0023052	signaling	BP
GO:0030030	cell projection organization	BP
GO:0030154	cell differentiation	BP
GO:0030182	neuron differentiation	BP
GO:0031011	Ino80 complex	CC
GO:0031175	neuron projection development	BP
GO:0031248	protein acetyltransferase complex	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031491	nucleosome binding	MF
GO:0031493	obsolete nucleosomal histone binding	MF
GO:0031498	obsolete chromatin disassembly	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032984	protein-containing complex disassembly	BP
GO:0032986	protein-DNA complex disassembly	BP
GO:0032989	cellular component morphogenesis	BP
GO:0032990	cell part morphogenesis	BP
GO:0032991	protein-containing complex	CC
GO:0033202	DNA helicase complex	CC
GO:0033554	cellular response to stress	BP
GO:0034508	centromere complex assembly	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034728	nucleosome organization	BP
GO:0035060	brahma complex	CC
GO:0035267	NuA4 histone acetyltransferase complex	CC
GO:0036211	protein modification process	BP
GO:0040011	locomotion	BP
GO:0042221	response to chemical	BP
GO:0042330	taxis	BP
GO:0042393	histone binding	MF
GO:0042766	obsolete nucleosome mobilization	BP
GO:0043010	camera-type eye development	BP
GO:0043044	chromatin remodeling	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043189	H4/H2A histone acetyltransferase complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043486	obsolete histone exchange	BP
GO:0043543	protein acylation	BP
GO:0043933	protein-containing complex organization	BP
GO:0043967	histone H4 acetylation	BP
GO:0043968	histone H2A acetylation	BP
GO:0043981	histone H4-K5 acetylation	BP
GO:0043982	histone H4-K8 acetylation	BP
GO:0043983	histone H4-K12 acetylation	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044454	obsolete nuclear chromosome part	CC
GO:0044464	obsolete cell part	CC
GO:0044877	protein-containing complex binding	MF
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0045944	positive regulation of transcription by RNA polymerase II	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048468	cell development	BP
GO:0048513	animal organ development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048666	neuron development	BP
GO:0048667	cell morphogenesis involved in neuron differentiation	BP
GO:0048699	generation of neurons	BP
GO:0048731	system development	BP
GO:0048812	neuron projection morphogenesis	BP
GO:0048813	dendrite morphogenesis	BP
GO:0048856	anatomical structure development	BP
GO:0048858	cell projection morphogenesis	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051301	cell division	BP
GO:0051382	kinetochore assembly	BP
GO:0051383	kinetochore organization	BP
GO:0051716	cellular response to stimulus	BP
GO:0060041	retina development in camera-type eye	BP
GO:0060147	regulation of post-transcriptional gene silencing	BP
GO:0060148	positive regulation of post-transcriptional gene silencing	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060303	obsolete regulation of nucleosome density	BP
GO:0060964	regulation of miRNA-mediated gene silencing	BP
GO:0060966	regulation of gene silencing by RNA	BP
GO:0060968	obsolete regulation of gene silencing	BP
GO:0061640	cytoskeleton-dependent cytokinesis	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065004	protein-DNA complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070603	SWI/SNF superfamily-type complex	CC
GO:0070646	protein modification by small protein removal	BP
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0070925	organelle assembly	BP
GO:0070983	dendrite guidance	BP
GO:0071564	npBAF complex	CC
GO:0071565	nBAF complex	CC
GO:0071704	organic substance metabolic process	BP
GO:0071824	protein-DNA complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097346	INO80-type complex	CC
GO:0097458	obsolete neuron part	CC
GO:0097485	neuron projection guidance	BP
GO:0097659	nucleic acid-templated transcription	BP
GO:0120036	plasma membrane bounded cell projection organization	BP
GO:0120039	plasma membrane bounded cell projection morphogenesis	BP
GO:0140110	transcription regulator activity	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1902493	acetyltransferase complex	CC
GO:1902494	catalytic complex	CC
GO:1902562	H4 histone acetyltransferase complex	CC
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1904949	ATPase complex	CC
GO:1990234	transferase complex	CC
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000637	positive regulation of miRNA-mediated gene silencing	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04145	Phagosome	Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.