PPGR - Gene Detail

Basic Information

Gene ID	Juni_Chr7.1223.g View in Genome Browser
Position	Chr7:18881481-18890427 (+) 8946bp
Gene Type	gene
Gene Description (Protein Product)	Porphobilinogen deaminase
Organism	Juglans nigra
Also AS	AT5G08280

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Juni_Chr8.506.g Belongs to the 14-3-3 family

Juni_Chr7.422.g Belongs to the 14-3-3 family

Juni_Chr8.574.g Belongs to the 14-3-3 family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004418	hydroxymethylbilane synthase activity	MF
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006778	porphyrin-containing compound metabolic process	BP
GO:0006779	porphyrin-containing compound biosynthetic process	BP
GO:0006783	heme biosynthetic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009451	RNA modification	BP
GO:0009507	chloroplast	CC
GO:0009526	plastid envelope	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009941	chloroplast envelope	CC
GO:0009987	cellular process	BP
GO:0015994	chlorophyll metabolic process	BP
GO:0015995	chlorophyll biosynthetic process	BP
GO:0016070	RNA metabolic process	BP
GO:0016740	transferase activity	MF
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0033013	tetrapyrrole metabolic process	BP
GO:0033014	tetrapyrrole biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042168	heme metabolic process	BP
GO:0042440	pigment metabolic process	BP
GO:0042742	defense response to bacterium	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046148	pigment biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048046	apoplast	CC
GO:0050896	response to stimulus	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0098542	defense response to other organism	BP
GO:1900865	chloroplast RNA modification	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00860	Porphyrin and chlorophyll metabolism	-