PPGR - Gene Detail

Basic Information

Gene ID	Juni_Chr7.2306.g View in Genome Browser
Position	Chr7:36686858-36689464 (+) 2606bp
Gene Type	gene
Gene Description (Protein Product)	Initiation factor
Organism	Juglans nigra
Also AS	AT5G35620

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Juni_Chr8.48.g Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome

Juni_Chr7.545.g Belongs to the DEAD box helicase family

Juni_Chr9.876.g Regulator of nonsense transcripts 1 homolog

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000339	RNA cap binding	MF
GO:0000340	RNA 7-methylguanosine cap binding	MF
GO:0002682	regulation of immune system process	BP
GO:0002683	negative regulation of immune system process	BP
GO:0002697	regulation of immune effector process	BP
GO:0002698	negative regulation of immune effector process	BP
GO:0002831	regulation of response to biotic stimulus	BP
GO:0002832	negative regulation of response to biotic stimulus	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003743	translation initiation factor activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005845	mRNA cap binding complex	CC
GO:0006412	translation	BP
GO:0006413	translational initiation	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008135	translation factor activity, RNA binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009615	response to virus	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0019538	protein metabolic process	BP
GO:0031347	regulation of defense response	BP
GO:0031348	negative regulation of defense response	BP
GO:0032101	regulation of response to external stimulus	BP
GO:0032102	negative regulation of response to external stimulus	BP
GO:0032991	protein-containing complex	CC
GO:0034518	RNA cap binding complex	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043900	obsolete regulation of multi-organism process	BP
GO:0043901	obsolete negative regulation of multi-organism process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0048519	negative regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0050687	negative regulation of defense response to virus	BP
GO:0050688	regulation of defense response to virus	BP
GO:0050789	regulation of biological process	BP
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP