PPGR - Gene Detail

Basic Information

Gene ID	Juni_Chr8.1680.g View in Genome Browser
Position	Chr8:23145876-23147581 (+) 1705bp
Gene Type	gene
Gene Description (Protein Product)	"GDP-mannose 4
Organism	Juglans nigra
Also AS	AT3G51160

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Juni_Chr8.506.g Belongs to the 14-3-3 family

Juni_Chr8.574.g Belongs to the 14-3-3 family

Juni_Chr9.1584.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000902	cell morphogenesis	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008446	GDP-mannose 4,6-dehydratase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009225	nucleotide-sugar metabolic process	BP
GO:0009226	nucleotide-sugar biosynthetic process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009826	unidimensional cell growth	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0016829	lyase activity	MF
GO:0016835	carbon-oxygen lyase activity	MF
GO:0016836	hydro-lyase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0032502	developmental process	BP
GO:0032989	cellular component morphogenesis	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0040007	growth	BP
GO:0042350	GDP-L-fucose biosynthetic process	BP
GO:0042351	'de novo' GDP-L-fucose biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046368	GDP-L-fucose metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048589	developmental growth	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00520	Amino sugar and nucleotide sugar metabolism	-
map00051	Fructose and mannose metabolism	-