PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Juni_Chr9.967.g View in Genome Browser
Position	Chr9:16387783-16395991 (+) 8208bp
Gene Type	gene
Gene Description (Protein Product)	lysine-specific demethylase
Organism	Juglans nigra
Also AS	AT5G46910

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000785	chromatin	CC
GO:0000792	heterochromatin	CC
GO:0000902	cell morphogenesis	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005694	chromosome	CC
GO:0006325	chromatin organization	BP
GO:0006464	protein modification process	BP
GO:0006482	protein demethylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008214	protein dealkylation	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009741	response to brassinosteroid	BP
GO:0009791	post-embryonic development	BP
GO:0009826	unidimensional cell growth	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009908	flower development	BP
GO:0009987	cellular process	BP
GO:0010016	shoot system morphogenesis	BP
GO:0010033	response to organic substance	BP
GO:0010228	vegetative to reproductive phase transition of meristem	BP
GO:0010468	regulation of gene expression	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010639	negative regulation of organelle organization	BP
GO:0014070	response to organic cyclic compound	BP
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016577	histone demethylation	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0022414	reproductive process	BP
GO:0031056	regulation of histone modification	BP
GO:0031057	negative regulation of histone modification	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031400	negative regulation of protein modification process	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032269	negative regulation of protein metabolic process	BP
GO:0032451	demethylase activity	MF
GO:0032452	histone demethylase activity	MF
GO:0032454	histone H3K9 demethylase activity	MF
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032989	cellular component morphogenesis	BP
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0033169	histone H3-K9 demethylation	BP
GO:0033993	response to lipid	BP
GO:0035065	regulation of histone acetylation	BP
GO:0035067	negative regulation of histone acetylation	BP
GO:0036211	protein modification process	BP
GO:0040007	growth	BP
GO:0040029	epigenetic regulation of gene expression	BP
GO:0042221	response to chemical	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045815	transcription initiation-coupled chromatin remodeling	BP
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048439	flower morphogenesis	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048589	developmental growth	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051248	negative regulation of protein metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0070076	histone lysine demethylation	BP
GO:0070988	demethylation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090567	reproductive shoot system development	BP
GO:0090698	post-embryonic plant morphogenesis	BP
GO:0099402	plant organ development	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901983	regulation of protein acetylation	BP
GO:1901984	negative regulation of protein acetylation	BP
GO:1902275	regulation of chromatin organization	BP
GO:1905268	negative regulation of chromatin organization	BP
GO:2000756	regulation of peptidyl-lysine acetylation	BP
GO:2000757	negative regulation of peptidyl-lysine acetylation	BP
GO:2001251	negative regulation of chromosome organization	BP