Basic Information
Gene ID
JreChr01G10011
Position
chr1:10123114-10125929 (+)
2815bp
Gene Type
gene
Gene Description (Protein Product)
Cyclic nucleotide-gated ion channel 1-like
Organism
Also AS AT5G53130

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JreChr10G10084 Belongs to the protein kinase superfamily. Ser Thr protein kinase family
JreChr10G10085 Belongs to the protein kinase superfamily. Ser Thr protein kinase family
JreChr13G10299 ABC transporter G family member
Regulatory gene
JreChr05G10626 Protein BASIC PENTACYSTEINE2-like
JreChr05G10629 SNW SKI-interacting
JreChr05G12542 Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map04626 Plant-pathogen interaction Plants lack animal-like adaptive immunity mechanisms, and therefore have evolved a specific system with multiple layers against invading pathogens. The primary response includes the perception of pathogens by cell-surface pattern-recognition receptors (PRRs) and is referred to as PAMP-triggered immunity (PTI). Activation of FLS2 and EFR triggers MAPK signaling pathway that activates defense genes for antimictobial compounds. The increase in the cytosolic Ca2+ concentration is also a regulator for production of reactive oxygen species and localized programmed cell death/hypersensitive response. The secondary response is called effector-triggered immunity (ETI). Pathogens can acquire the ability to suppress PTI by directly injecting effector proteins into the plant cell through secretion systems. In addition, pathogens can manipulate plant hormone signaling pathways to evade host immune responses using coronatine toxin. Some plants possess specific intracellular surveillance proteins (R proteins) to monitor the presence of pathogen virulence proteins. This ETI occurs with localized programmed cell death to arrest pathogen growth, resulting in cultivar-specific disease resistance.