Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
JreChr12G10189
View in Genome Browser
Position
chr12:131137-131760 (+)
623bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the SNF7 family
Organism
Juglans regia
Also AS AT1G17730

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JreChr13G10786 Belongs to the AAA ATPase family
JreChr13G10787 Belongs to the AAA ATPase family
JreChr12G11363 Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs
Regulatory gene
JreChr01G10089 dof zinc finger protein
JreChr01G11286 Dof zinc finger protein
JreChr01G11331 ZINC FINGER protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0006605 protein targeting BP
GO:0006623 protein targeting to vacuole BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0007034 vacuolar transport BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016192 vesicle-mediated transport BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034613 protein localization BP
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0045324 late endosome to vacuole transport BP
GO:0046907 intracellular transport BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072665 protein localization to vacuole BP
GO:0072666 establishment of protein localization to vacuole BP
GO:0097708 intracellular vesicle CC
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.