Basic Information
Gene ID
JreChr13G11503
Position
chr13:4059947-4076907 (-)
16960bp
Gene Type
gene
Gene Description (Protein Product)
Nuclear pore complex protein
Organism
Also AS AT3G10650

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JreChr15G10573 zinc finger CCCH domain-containing protein
JreChr14G11544 50S ribosomal protein L4
JreChr15G11759 CCR4-NOT transcription complex subunit
Regulatory gene
JreChr05G10626 Protein BASIC PENTACYSTEINE2-like
JreChr05G10629 SNW SKI-interacting
JreChr05G12542 Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.