Basic Information
Gene ID
JreChr16G10684
Position
chr16:19833182-19842167 (+)
8985bp
Gene Type
gene
Gene Description (Protein Product)
116 kDa U5 small nuclear ribonucleoprotein
Organism
Also AS AT1G06220

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JreChr16G11179 U6 snRNA-associated Sm-like protein
JreChr16G10708 Splicing factor 3B subunit
JreChr16G10738 Splicing factor 3B subunit
Regulatory gene
JreChr01G10089 dof zinc finger protein
JreChr01G10124 Homeobox-leucine zipper protein
JreChr01G10370 Floral homeotic protein APETALA

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.