Basic Information
Gene ID
JsiChr13G11361.g
Position
chr13:6926775-6927107 (+)
332bp
Gene Type
gene
Gene Description (Protein Product)
PHD finger-like domain-containing protein
Organism
Also AS AT1G07170

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JsiChr16G10014.g Splicing factor 3B subunit
JsiChr16G10521.g U6 snRNA-associated Sm-like protein
JsiChr13G12068.g splicing factor 3A subunit
Regulatory gene
JsiChr01G10114.g MADS-box transcription factor
JsiChr01G10251.g AP2-like ethylene-responsive transcription factor
JsiChr01G10578.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.