Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Lchi01533.g
View in Genome Browser
Position
Scaffold1191:1477463-1480608 (-)
3145bp
Gene Type
gene
Gene Description (Protein Product)
recombinational repair
Organism
Liriodendron chinense
Also AS AT1G50410

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi15220.g Histone-lysine n-methyltransferase
Lchi12690.g Histone-lysine N-methyltransferase
Lchi02496.g Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
Regulatory gene
Lchi00695.g transcription factor
Lchi00789.g heat shock factor protein
Lchi00798.g ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000228 nuclear chromosome CC
GO:0000278 mitotic cell cycle BP
GO:0000724 double-strand break repair via homologous recombination BP
GO:0000725 recombinational repair BP
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0003674 molecular_function MF
GO:0003678 DNA helicase activity MF
GO:0003824 catalytic activity MF
GO:0004003 DNA helicase activity MF
GO:0004386 helicase activity MF
GO:0004842 ubiquitin-protein transferase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006260 DNA replication BP
GO:0006261 DNA-templated DNA replication BP
GO:0006281 DNA repair BP
GO:0006302 double-strand break repair BP
GO:0006310 DNA recombination BP
GO:0006464 protein modification process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007154 cell communication BP
GO:0008026 helicase activity MF
GO:0008094 ATP-dependent activity, acting on DNA MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009292 horizontal gene transfer BP
GO:0009294 DNA-mediated transformation BP
GO:0009605 response to external stimulus BP
GO:0009892 negative regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009895 negative regulation of catabolic process BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0016043 cellular component organization BP
GO:0016462 pyrophosphatase activity MF
GO:0016567 protein ubiquitination BP
GO:0016740 transferase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0022402 cell cycle process BP
GO:0030162 regulation of proteolysis BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031330 negative regulation of cellular catabolic process BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032392 DNA geometric change BP
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process BP
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process BP
GO:0032446 protein modification by small protein conjugation BP
GO:0032508 DNA duplex unwinding BP
GO:0033260 nuclear DNA replication BP
GO:0033554 cellular response to stress BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0036211 protein modification process BP
GO:0042176 regulation of protein catabolic process BP
GO:0042177 negative regulation of protein catabolic process BP
GO:0042262 DNA protection BP
GO:0042623 ATP hydrolysis activity MF
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044764 obsolete multi-organism cellular process BP
GO:0044786 cell cycle DNA replication BP
GO:0045003 double-strand break repair via synthesis-dependent strand annealing BP
GO:0045005 DNA-templated DNA replication maintenance of fidelity BP
GO:0045861 negative regulation of proteolysis BP
GO:0046483 heterocycle metabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051276 chromosome organization BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061136 regulation of proteasomal protein catabolic process BP
GO:0061630 ubiquitin protein ligase activity MF
GO:0061659 ubiquitin-like protein ligase activity MF
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070035 obsolete purine NTP-dependent helicase activity MF
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071103 DNA conformation change BP
GO:0071496 cellular response to external stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0140083 ATP-dependent protein-DNA unloader activity MF
GO:0140096 catalytic activity, acting on a protein MF
GO:0140097 catalytic activity, acting on DNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901799 negative regulation of proteasomal protein catabolic process BP
GO:1902298 cell cycle DNA replication maintenance of fidelity BP
GO:1902969 mitotic DNA replication BP
GO:1903047 mitotic cell cycle process BP
GO:1903050 regulation of proteolysis involved in protein catabolic process BP
GO:1903051 negative regulation of proteolysis involved in protein catabolic process BP
GO:1903362 regulation of protein catabolic process BP
GO:1903363 negative regulation of protein catabolic process BP
GO:1990505 mitotic DNA replication maintenance of fidelity BP
GO:2000058 regulation of ubiquitin-dependent protein catabolic process BP
GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process BP