PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Lchi07292.g View in Genome Browser
Position	Scaffold172:891856-893738 (-) 1882bp
Gene Type	gene
Gene Description (Protein Product)	structural constituent of ribosome
Organism	Liriodendron chinense
Also AS	AT1G26910

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Lchi16207.g Belongs to the universal ribosomal protein uL3 family Lchi22324.g Belongs to the universal ribosomal protein uL3 family Lchi32127.g Belongs to the universal ribosomal protein uL11 family
Regulatory gene	Lchi02489.g transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000027	ribosomal large subunit assembly	BP
GO:0002181	cytoplasmic translation	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003735	structural constituent of ribosome	MF
GO:0005198	structural molecule activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0005791	rough endoplasmic reticulum	CC
GO:0005829	cytosol	CC
GO:0005840	ribosome	CC
GO:0005844	polysome	CC
GO:0006412	translation	BP
GO:0006415	translational termination	BP
GO:0006417	regulation of translation	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0007283	spermatogenesis	BP
GO:0007399	nervous system development	BP
GO:0007417	central nervous system development	BP
GO:0007420	brain development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009790	embryo development	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0012505	endomembrane system	CC
GO:0015934	large ribosomal subunit	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019953	sexual reproduction	BP
GO:0022411	cellular component disassembly	BP
GO:0022414	reproductive process	BP
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0022625	cytosolic large ribosomal subunit	CC
GO:0022626	cytosolic ribosome	CC
GO:0030867	rough endoplasmic reticulum membrane	CC
GO:0031090	organelle membrane	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031984	organelle subcompartment	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032984	protein-containing complex disassembly	BP
GO:0032991	protein-containing complex	CC
GO:0034248	regulation of amide metabolic process	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0036477	somatodendritic compartment	CC
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0042254	ribosome biogenesis	BP
GO:0042255	ribosome assembly	BP
GO:0042273	ribosomal large subunit biogenesis	BP
GO:0043025	neuronal cell body	CC
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043624	protein-containing complex disassembly	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044297	cell body	CC
GO:0044391	ribosomal subunit	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0045182	translation regulator activity	MF
GO:0048232	male gamete generation	BP
GO:0048513	animal organ development	BP
GO:0048568	embryonic organ development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060322	head development	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0070925	organelle assembly	BP
GO:0071704	organic substance metabolic process	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097458	obsolete neuron part	CC
GO:0098552	side of membrane	CC
GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	CC
GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	CC
GO:0098562	cytoplasmic side of membrane	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1990403	embryonic brain development	BP
GO:1990904	ribonucleoprotein complex	CC
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP

KEGG Term	Name	Description
map03010	Ribosome	-