Basic Information
Gene ID
Position
Scaffold2273:1495435-1500266 (-)
4831bp
Gene Type
gene
Gene Description (Protein Product)
Polygalacturonase
Organism
Also AS AT1G60590

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi12413.g Pectate lyase
Lchi09424.g Pectate lyase
Lchi11480.g Acts in the modification of cell walls via demethylesterification of cell wall pectin
Regulatory gene
Lchi01587.g MADS-box transcription factor
Lchi01744.g Floral homeotic protein
Lchi02285.g MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0004650 polygalacturonase activity MF
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005623 obsolete cell CC
GO:0008150 biological_process BP
GO:0009664 plant-type cell wall organization BP
GO:0009825 multidimensional cell growth BP
GO:0009827 plant-type cell wall modification BP
GO:0009831 plant-type cell wall modification involved in multidimensional cell growth BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016787 hydrolase activity MF
GO:0016798 hydrolase activity, acting on glycosyl bonds MF
GO:0030312 external encapsulating structure CC
GO:0040007 growth BP
GO:0042545 cell wall modification BP
GO:0042547 cell wall modification involved in multidimensional cell growth BP
GO:0044464 obsolete cell part CC
GO:0045229 external encapsulating structure organization BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071669 plant-type cell wall organization or biogenesis BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
KEGG Term Name Description
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -