PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Lchi12164.g View in Genome Browser
Position	Scaffold13:4087325-4088554 (-) 1229bp
Gene Type	gene
Gene Description (Protein Product)	serine threonine-protein kinase
Organism	Liriodendron chinense
Also AS	AT4G35230

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Lchi15161.g Serine threonine-protein kinase Lchi17484.g Belongs to the protein kinase superfamily. Ser Thr protein kinase family Lchi15909.g serine threonine-protein kinase
Regulatory gene	Lchi01587.g MADS-box transcription factor Lchi01744.g Floral homeotic protein Lchi02285.g MADS-box protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000902	cell morphogenesis	BP
GO:0001101	response to acid chemical	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004672	protein kinase activity	MF
GO:0004674	protein serine/threonine kinase activity	MF
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	MF
GO:0004888	transmembrane signaling receptor activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007166	cell surface receptor signaling pathway	BP
GO:0007167	enzyme-linked receptor protein signaling pathway	BP
GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009506	plasmodesma	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009620	response to fungus	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0009741	response to brassinosteroid	BP
GO:0009742	brassinosteroid mediated signaling pathway	BP
GO:0009755	hormone-mediated signaling pathway	BP
GO:0009790	embryo development	BP
GO:0009826	unidimensional cell growth	BP
GO:0009898	cytoplasmic side of plasma membrane	CC
GO:0009966	regulation of signal transduction	BP
GO:0009967	positive regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010098	suspensor development	BP
GO:0010646	regulation of cell communication	BP
GO:0010647	positive regulation of cell communication	BP
GO:0014070	response to organic cyclic compound	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0019199	transmembrane receptor protein kinase activity	MF
GO:0019538	protein metabolic process	BP
GO:0023051	regulation of signaling	BP
GO:0023052	signaling	BP
GO:0023056	positive regulation of signaling	BP
GO:0030054	cell junction	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032870	cellular response to hormone stimulus	BP
GO:0032989	cellular component morphogenesis	BP
GO:0033993	response to lipid	BP
GO:0036211	protein modification process	BP
GO:0038023	signaling receptor activity	MF
GO:0040007	growth	BP
GO:0042221	response to chemical	BP
GO:0042742	defense response to bacterium	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043401	steroid hormone mediated signaling pathway	BP
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048545	response to steroid hormone	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048589	developmental growth	BP
GO:0048598	embryonic morphogenesis	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050832	defense response to fungus	BP
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0051716	cellular response to stimulus	BP
GO:0055044	symplast	CC
GO:0060089	molecular transducer activity	MF
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0065007	biological regulation	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071310	cellular response to organic substance	BP
GO:0071367	cellular response to brassinosteroid stimulus	BP
GO:0071383	cellular response to steroid hormone stimulus	BP
GO:0071396	cellular response to lipid	BP
GO:0071407	cellular response to organic cyclic compound	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0080159	zygote elongation	BP
GO:0097305	response to alcohol	BP
GO:0098542	defense response to other organism	BP
GO:0098552	side of membrane	CC
GO:0098562	cytoplasmic side of membrane	CC
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1902531	regulation of intracellular signal transduction	BP
GO:1902533	positive regulation of intracellular signal transduction	BP

KEGG Term	Name	Description
map04075	Plant hormone signal transduction	-