Basic Information
Gene ID
Position
Scaffold3341:520033-537895 (-)
17862bp
Gene Type
gene
Gene Description (Protein Product)
Plays a complex role in regulating the basal catalytic activity of the alpha subunit
Organism
Also AS AT5G47080

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi20812.g belongs to the protein kinase superfamily
Lchi26508.g belongs to the protein kinase superfamily
Lchi33759.g Plays a complex role in regulating the basal catalytic activity of the alpha subunit
Regulatory gene
Lchi01587.g MADS-box transcription factor
Lchi01744.g Floral homeotic protein
Lchi02285.g MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map04712 Circadian rhythm - plant -
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.