Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Lchi19758.g
View in Genome Browser
Position
Scaffold1497:1948818-1951985 (-)
3167bp
Gene Type
gene
Gene Description (Protein Product)
RAN GTPase-activating protein
Organism
Liriodendron chinense
Also AS AT3G63130

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi23241.g Belongs to the ubiquitin-conjugating enzyme family
Lchi23244.g Belongs to the ubiquitin-conjugating enzyme family
Lchi30809.g Small ubiquitin-related modifier 2
Regulatory gene
Lchi00695.g transcription factor
Lchi00913.g transcription factor
Lchi01150.g Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000278 mitotic cell cycle BP
GO:0000281 mitotic cytokinesis BP
GO:0000910 cytokinesis BP
GO:0000911 cytokinesis by cell plate formation BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005737 cytoplasm CC
GO:0005819 spindle CC
GO:0005856 cytoskeleton CC
GO:0005886 plasma membrane CC
GO:0006606 protein import into nucleus BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006913 nucleocytoplasmic transport BP
GO:0007049 cell cycle BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009504 cell plate CC
GO:0009507 chloroplast CC
GO:0009524 phragmoplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015630 microtubule cytoskeleton CC
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0017038 protein import BP
GO:0022402 cell cycle process BP
GO:0031090 organelle membrane CC
GO:0031965 nuclear membrane CC
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0032153 cell division site CC
GO:0032506 cytokinetic process BP
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034504 protein localization to nucleus BP
GO:0034613 protein localization BP
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0051169 nuclear transport BP
GO:0051170 import into nucleus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051301 cell division BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071944 cell periphery CC
GO:0072594 establishment of protein localization to organelle BP
GO:1902410 mitotic cytokinetic process BP
GO:1903047 mitotic cell cycle process BP
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.