Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Lchi20890.g
View in Genome Browser
Position
Scaffold1606:1021578-1022747 (+)
1169bp
Gene Type
gene
Gene Description (Protein Product)
transcription factor
Organism
Liriodendron chinense
Also AS AT4G37260

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi23052.g Involved in nucleolar processing of pre-18S ribosomal RNA
Lchi26497.g E3 ubiquitin-protein ligase
Lchi28371.g Auxin-induced protein
Regulatory gene
Lchi02489.g transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific MF
GO:0000988 obsolete transcription factor activity, protein binding MF
GO:0000989 obsolete transcription factor activity, transcription factor binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding MF
GO:0001101 response to acid chemical BP
GO:0001134 obsolete transcription regulator recruiting activity MF
GO:0001135 obsolete RNA polymerase II transcription regulator recruiting activity MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006082 organic acid metabolic process BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006970 response to osmotic stress BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009620 response to fungus BP
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009719 response to endogenous stimulus BP
GO:0009723 response to ethylene BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009737 response to abscisic acid BP
GO:0009739 response to gibberellin BP
GO:0009751 response to salicylic acid BP
GO:0009753 response to jasmonic acid BP
GO:0009791 post-embryonic development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010200 response to chitin BP
GO:0010243 response to organonitrogen compound BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0010928 regulation of auxin mediated signaling pathway BP
GO:0010929 positive regulation of auxin mediated signaling pathway BP
GO:0014070 response to organic cyclic compound BP
GO:0016143 S-glycoside metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019748 secondary metabolic process BP
GO:0019757 glycosinolate metabolic process BP
GO:0019760 glucosinolate metabolic process BP
GO:0022622 root system development BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030154 cell differentiation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0033993 response to lipid BP
GO:0042221 response to chemical BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042742 defense response to bacterium BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0043565 sequence-specific DNA binding MF
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0046677 response to antibiotic BP
GO:0046686 response to cadmium ion BP
GO:0047484 regulation of response to osmotic stress BP
GO:0048364 root development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048527 lateral root development BP
GO:0048528 post-embryonic root development BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050832 defense response to fungus BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090696 post-embryonic plant organ development BP
GO:0097159 organic cyclic compound binding MF
GO:0097305 response to alcohol BP
GO:0098542 defense response to other organism BP
GO:0099402 plant organ development BP
GO:0140110 transcription regulator activity MF
GO:1901000 regulation of response to salt stress BP
GO:1901001 negative regulation of response to salt stress BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901657 glycosyl compound metabolic process BP
GO:1901698 response to nitrogen compound BP
GO:1901700 response to oxygen-containing compound BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:2000022 regulation of jasmonic acid mediated signaling pathway BP
GO:2000031 regulation of salicylic acid mediated signaling pathway BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001023 regulation of response to drug BP
GO:2001038 regulation of cellular response to drug BP
GO:2001141 regulation of RNA biosynthetic process BP