Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Lchi23297.g
View in Genome Browser
Position
Scaffold142:5775358-5776028 (+)
670bp
Gene Type
gene
Gene Description (Protein Product)
Interconversion of serine and glycine
Organism
Liriodendron chinense
Also AS AT5G26780

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi28846.g Interconversion of serine and glycine
Lchi29171.g Belongs to the complex I LYR family
Lchi24165.g NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9
Regulatory gene
Lchi01186.g Protein BASIC PENTACYSTEINE7-like
Lchi01587.g MADS-box transcription factor
Lchi01744.g Floral homeotic protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0001505 regulation of neurotransmitter levels BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004372 glycine hydroxymethyltransferase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005740 mitochondrial envelope CC
GO:0005743 mitochondrial inner membrane CC
GO:0005746 mitochondrial respirasome CC
GO:0005747 mitochondrial respiratory chain complex I CC
GO:0005829 cytosol CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006544 glycine metabolic process BP
GO:0006563 L-serine metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0009069 serine family amino acid metabolic process BP
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0016742 hydroxymethyl-, formyl- and related transferase activity MF
GO:0017144 xenobiotic metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019866 organelle inner membrane CC
GO:0030964 NADH dehydrogenase complex CC
GO:0031090 organelle membrane CC
GO:0031966 mitochondrial membrane CC
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0032991 protein-containing complex CC
GO:0042133 neurotransmitter metabolic process BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044455 obsolete mitochondrial membrane part CC
GO:0044464 obsolete cell part CC
GO:0045271 respiratory chain complex I CC
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0050897 cobalt ion binding MF
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070469 respirasome CC
GO:0071704 organic substance metabolic process BP
GO:0098796 membrane protein complex CC
GO:0098798 mitochondrial protein-containing complex CC
GO:0098800 inner mitochondrial membrane protein complex CC
GO:0098803 respiratory chain complex CC
GO:1901564 organonitrogen compound metabolic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1902494 catalytic complex CC
GO:1990204 oxidoreductase complex CC
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00670 One carbon pool by folate -
map00630 Glyoxylate and dicarboxylate metabolism -
map00460 Cyanoamino acid metabolism -
map00260 Glycine, serine and threonine metabolism Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].