PPGR - Gene Detail

Gene ID	Lchi23321.g View in Genome Browser
Position	Scaffold779:1958397-1959734 (-) 1337bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily
Organism	Liriodendron chinense
Also AS	AT3G28200

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)

Lchi27516.g Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Lchi27517.g Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Lchi34336.g Belongs to the oxygen-dependent FAD-linked oxidoreductase family

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	MF
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0009044	xylan 1,4-beta-xylosidase activity	MF
GO:0009505	plant-type cell wall	CC
GO:0016787	hydrolase activity	MF
GO:0016798	hydrolase activity, acting on glycosyl bonds	MF
GO:0030312	external encapsulating structure	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0071944	cell periphery	CC
GO:0097599	xylanase activity	MF

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00940	Phenylpropanoid biosynthesis	Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.