PPGR - Gene Detail

Basic Information

Gene ID	Lchi24653.g View in Genome Browser
Position	Scaffold934:193314-210330 (+) 17016bp
Gene Type	gene
Gene Description (Protein Product)	Aldehyde dehydrogenase family
Organism	Liriodendron chinense
Also AS	AT3G24503

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Lchi35131.g 4-coumarate-coa ligase

Lchi34336.g Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Lchi27516.g Belongs to the oxygen-dependent FAD-linked oxidoreductase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004029	aldehyde dehydrogenase (NAD+) activity	MF
GO:0004030	aldehyde dehydrogenase [NAD(P)+] activity	MF
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009698	phenylpropanoid metabolic process	BP
GO:0009699	phenylpropanoid biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	MF
GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	MF
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019748	secondary metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044550	secondary metabolite biosynthetic process	BP
GO:0050269	coniferyl-aldehyde dehydrogenase activity	MF
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00940	Phenylpropanoid biosynthesis	Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.
map00903	Limonene and pinene degradation	-
map00770	Pantothenate and CoA biosynthesis	-
map00620	Pyruvate metabolism	-
map00561	Glycerolipid metabolism	-
map00410	beta-Alanine metabolism	-
map00380	Tryptophan metabolism	-
map00340	Histidine metabolism	-
map00330	Arginine and proline metabolism	-
map00310	Lysine degradation	-
map00280	Valine, leucine and isoleucine degradation	-
map00071	Fatty acid metabolism	-
map00053	Ascorbate and aldarate metabolism	-
map00010	Glycolysis / Gluconeogenesis	Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which often corresponds to operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].