Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Lchi34355.g
View in Genome Browser
Position
Scaffold3048:24273-62344 (-)
38071bp
Gene Type
gene
Gene Description (Protein Product)
Pre-mRNA-splicing factor
Organism
Liriodendron chinense
Also AS AT5G28740

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi34974.g Splicing factor 3A subunit 2
Lchi34961.g Pre-mRNA-splicing factor ATP-dependent RNA helicase
Lchi35498.g WD40 repeats
Regulatory gene
Lchi02489.g transcription factor
Lchi03311.g WRKY Transcription Factor
Lchi03961.g WRKY Transcription Factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.