Basic Information
Gene ID
MD05G1122700.v1.1
Position
Chr05:24544908-24547532 (-)
2624bp
Gene Type
gene
Gene Description (Protein Product)
Pre-mRNA-splicing factor
Organism
Also AS MD05G1122700AT2G16860

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
MD09G1127400.v1.1 pre-mRNA-processing-splicing factor
MD12G1216200.v1.1 pre-mRNA-splicing factor ISY1 homolog
MD09G1231900.v1.1 Pre-mRNA-splicing factor ATP-dependent RNA
Regulatory gene
MD00G1002600.v1.1 transcription factor
MD00G1028600.v1.1 NAC domain-containing protein
MD00G1032600.v1.1 SANT SWI3; ADA2; N-CoR and TFIIIB'' DNA-binding domains

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.