Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
MD06G1013700.v1.1
View in Genome Browser
Position
Chr06:1725560-1739393 (+)
13833bp
Gene Type
gene
Gene Description (Protein Product)
Catalyzes the synthesis of dihydrouridine; a modified base found in the D-loop of most tRNAs
Organism
Malus domestica
Also AS MD06G1013700AT3G49640

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
MD07G1277700.v1.1 Proline--tRNA
MD09G1029500.v1.1 tRNA (adenine(58)-N(1))-methyltransferase
MD17G1031500.v1.1 tRNA (adenine(58)-N(1))-methyltransferase
Regulatory gene
MD05G1054600.v1.1 Protein BASIC PENTACYSTEINE4-like
MD08G1016400.v1.1 Protein BASIC PENTACYSTEINE6-like
MD10G1062100.v1.1 Protein BASIC PENTACYSTEINE4-like

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0001932 regulation of protein phosphorylation BP
GO:0001933 negative regulation of protein phosphorylation BP
GO:0002943 tRNA dihydrouridine synthesis BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003725 double-stranded RNA binding MF
GO:0003824 catalytic activity MF
GO:0004857 enzyme inhibitor activity MF
GO:0004860 protein kinase inhibitor activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006399 tRNA metabolic process BP
GO:0006400 tRNA modification BP
GO:0006469 negative regulation of protein kinase activity BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008033 tRNA processing BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009451 RNA modification BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010563 negative regulation of phosphorus metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010941 regulation of cell death BP
GO:0016070 RNA metabolic process BP
GO:0016491 oxidoreductase activity MF
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0017150 tRNA dihydrouridine synthase activity MF
GO:0019207 kinase regulator activity MF
GO:0019210 kinase inhibitor activity MF
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019887 protein kinase regulator activity MF
GO:0030234 enzyme regulator activity MF
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031400 negative regulation of protein modification process BP
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0033673 negative regulation of kinase activity BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042325 regulation of phosphorylation BP
GO:0042326 negative regulation of phosphorylation BP
GO:0043086 negative regulation of catalytic activity BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043549 regulation of kinase activity BP
GO:0044092 negative regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045859 regulation of protein kinase activity BP
GO:0045936 negative regulation of phosphate metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051338 regulation of transferase activity BP
GO:0051348 negative regulation of transferase activity BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060548 negative regulation of cell death BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0071704 organic substance metabolic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0098772 molecular function regulator activity MF
GO:0140098 catalytic activity, acting on RNA MF
GO:0140101 catalytic activity, acting on a tRNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF