PPGR - Gene Detail

Basic Information

Gene ID	MD09G1175700.v1.1 View in Genome Browser
Position	Chr09:14975062-14983601 (+) 8539bp
Gene Type	gene
Gene Description (Protein Product)	CCAAT enhancer-binding protein
Organism	Malus domestica
Also AS	MD09G1175700AT1G72440

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

MD10G1043800.v1.1 E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair; ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator

MD15G1437000.v1.1 RNA-binding protein

MD16G1147700.v1.1 30S ribosomal protein S1

Regulatory gene

MD00G1015800.v1.1 LOB domain-containing protein

MD00G1016900.v1.1 LOB domain-containing protein

MD00G1059900.v1.1 LOB domain-containing protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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