Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
MD12G1202300.v1.1
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Position
Chr12:28280940-28283196 (+)
2256bp
Gene Type
gene
Gene Description (Protein Product)
zinc finger CCCH domain-containing protein
Organism
Malus domestica
Also AS MD12G1202300AT5G26749

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
MD17G1212800.v1.1 pre-mRNA-processing-splicing factor
MD13G1244100.v1.1 splicing factor 3A subunit
MD15G1105800.v1.1 calcium homeostasis endoplasmic reticulum
Regulatory gene
MD00G1056300.v1.1 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
MD00G1103900.v1.1 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
MD00G1115200.v1.1 Dof zinc finger protein
Target gene
MD00G1000200.v1.1 Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
MD00G1019200.v1.1 Membrane-associated 30 kDa protein
MD00G1026800.v1.1 Uncharacterized conserved protein (DUF2358)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005681 spliceosomal complex CC
GO:0005689 U12-type spliceosomal complex CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:1990904 ribonucleoprotein complex CC