PPGR - Gene Detail

Basic Information

Gene ID	MD12G1227300.v1.1 View in Genome Browser
Position	Chr12:30297676-30299111 (+) 1435bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the histone H2A family
Organism	Malus domestica
Also AS	MD12G1227300AT1G08880

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

MD15G1203800.v1.1 Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

MD14G1173000.v1.1 Belongs to the histone deacetylase family. HD Type 1 subfamily

MD15G1224500.v1.1 Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search; chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination

Regulatory gene

MD00G1000500.v1.1 Myb family transcription factor

MD00G1004900.v1.1 transcription factor

MD00G1060900.v1.1 Protein PHR1-LIKE 1-like isoform

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005694	chromosome	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC