Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
MD15G1178100.v1.1
View in Genome Browser
Position
Chr15:13941050-13944357 (-)
3307bp
Gene Type
gene
Gene Description (Protein Product)
cysteine-type peptidase activity
Organism
Malus domestica
Also AS MD15G1178100AT3G20630

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
MD17G1280900.v1.1 ubiquitin-40S ribosomal protein
MD16G1095800.v1.1 ubiquitin-40S ribosomal protein
MD17G1056200.v1.1 Ubiquitin conjugation factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000323 lytic vacuole CC
GO:0001654 eye development BP
GO:0001745 compound eye morphogenesis BP
GO:0001751 compound eye photoreceptor cell differentiation BP
GO:0001754 eye photoreceptor cell differentiation BP
GO:0001932 regulation of protein phosphorylation BP
GO:0001933 negative regulation of protein phosphorylation BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004175 endopeptidase activity MF
GO:0004197 cysteine-type endopeptidase activity MF
GO:0004843 cysteine-type deubiquitinase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005764 lysosome CC
GO:0005773 vacuole CC
GO:0005829 cytosol CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0007275 multicellular organism development BP
GO:0007399 nervous system development BP
GO:0007423 sensory organ development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008233 peptidase activity MF
GO:0008234 cysteine-type peptidase activity MF
GO:0008283 cell population proliferation BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009887 animal organ morphogenesis BP
GO:0009889 regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010243 response to organonitrogen compound BP
GO:0010468 regulation of gene expression BP
GO:0010498 proteasomal protein catabolic process BP
GO:0010506 regulation of autophagy BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010563 negative regulation of phosphorus metabolic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0010941 regulation of cell death BP
GO:0010992 ubiquitin recycling BP
GO:0010995 free ubiquitin chain depolymerization BP
GO:0016043 cellular component organization BP
GO:0016579 protein deubiquitination BP
GO:0016787 hydrolase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019725 cellular homeostasis BP
GO:0019783 ubiquitin-like protein peptidase activity MF
GO:0019899 enzyme binding MF
GO:0019941 modification-dependent protein catabolic process BP
GO:0022008 neurogenesis BP
GO:0022411 cellular component disassembly BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030154 cell differentiation BP
GO:0030162 regulation of proteolysis BP
GO:0030163 protein catabolic process BP
GO:0030182 neuron differentiation BP
GO:0030318 melanocyte differentiation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031400 negative regulation of protein modification process BP
GO:0031625 ubiquitin protein ligase binding MF
GO:0031647 regulation of protein stability BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032182 ubiquitin-like protein binding MF
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process BP
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032872 regulation of stress-activated MAPK cascade BP
GO:0032873 negative regulation of stress-activated MAPK cascade BP
GO:0032984 protein-containing complex disassembly BP
GO:0033554 cellular response to stress BP
GO:0034976 response to endoplasmic reticulum stress BP
GO:0035523 protein K29-linked deubiquitination BP
GO:0036211 protein modification process BP
GO:0036459 cysteine-type deubiquitinase activity MF
GO:0036503 ERAD pathway BP
GO:0036506 maintenance of unfolded protein BP
GO:0042176 regulation of protein catabolic process BP
GO:0042221 response to chemical BP
GO:0042325 regulation of phosphorylation BP
GO:0042326 negative regulation of phosphorylation BP
GO:0042592 homeostatic process BP
GO:0042981 regulation of apoptotic process BP
GO:0043066 negative regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043069 negative regulation of programmed cell death BP
GO:0043130 ubiquitin binding MF
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0043408 regulation of MAPK cascade BP
GO:0043409 negative regulation of MAPK cascade BP
GO:0043412 macromolecule modification BP
GO:0043473 pigmentation BP
GO:0043624 protein-containing complex disassembly BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0043933 protein-containing complex organization BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044313 protein K6-linked deubiquitination BP
GO:0044389 ubiquitin-like protein ligase binding MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045732 positive regulation of protein catabolic process BP
GO:0045862 positive regulation of proteolysis BP
GO:0045936 negative regulation of phosphate metabolic process BP
GO:0046328 regulation of JNK cascade BP
GO:0046329 negative regulation of JNK cascade BP
GO:0046530 photoreceptor cell differentiation BP
GO:0048066 developmental pigmentation BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048592 eye morphogenesis BP
GO:0048699 generation of neurons BP
GO:0048731 system development BP
GO:0048749 compound eye development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050821 protein stabilization BP
GO:0050896 response to stimulus BP
GO:0050931 pigment cell differentiation BP
GO:0051087 chaperone binding MF
GO:0051128 regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051261 protein depolymerization BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060548 negative regulation of cell death BP
GO:0061136 regulation of proteasomal protein catabolic process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070011 peptidase activity MF
GO:0070013 intracellular organelle lumen CC
GO:0070302 regulation of stress-activated protein kinase signaling cascade BP
GO:0070303 negative regulation of stress-activated protein kinase signaling cascade BP
GO:0070536 protein K63-linked deubiquitination BP
GO:0070628 proteasome binding MF
GO:0070646 protein modification by small protein removal BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071108 protein K48-linked deubiquitination BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0080135 regulation of cellular response to stress BP
GO:0090364 regulation of proteasome assembly BP
GO:0090596 sensory organ morphogenesis BP
GO:0101005 deubiquitinase activity MF
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901698 response to nitrogen compound BP
GO:1901800 positive regulation of proteasomal protein catabolic process BP
GO:1902531 regulation of intracellular signal transduction BP
GO:1902532 negative regulation of intracellular signal transduction BP
GO:1903050 regulation of proteolysis involved in protein catabolic process BP
GO:1903052 positive regulation of proteolysis involved in protein catabolic process BP
GO:1903362 regulation of protein catabolic process BP
GO:1903364 positive regulation of protein catabolic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1904288 BAT3 complex binding MF
GO:1904292 regulation of ERAD pathway BP
GO:1904294 positive regulation of ERAD pathway BP
GO:1904378 maintenance of unfolded protein involved in ERAD pathway BP
GO:1904454 ubiquitin-like protein peptidase activity MF
GO:1905897 regulation of response to endoplasmic reticulum stress BP
GO:1905898 positive regulation of response to endoplasmic reticulum stress BP
GO:1990380 K48-linked deubiquitinase activity MF
GO:2000058 regulation of ubiquitin-dependent protein catabolic process BP
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map04145 Phagosome Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.