Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
MD15G1439400.v1.1
View in Genome Browser
Position
Chr15:53947964-53955064 (+)
7100bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the class-I aminoacyl-tRNA synthetase family
Organism
Malus domestica
Also AS MD15G1439400AT1G09620

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
MD16G1168800.v1.1 Belongs to the class-I aminoacyl-tRNA synthetase family
MD17G1256800.v1.1 Belongs to the class-I aminoacyl-tRNA synthetase family
MD17G1260100.v1.1 valine--tRNA ligase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000323 lytic vacuole CC
GO:0001101 response to acid chemical BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004812 aminoacyl-tRNA ligase activity MF
GO:0004819 glutamine-tRNA ligase activity MF
GO:0004823 leucine-tRNA ligase activity MF
GO:0004832 valine-tRNA ligase activity MF
GO:0005096 GTPase activator activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005764 lysosome CC
GO:0005773 vacuole CC
GO:0005783 endoplasmic reticulum CC
GO:0005829 cytosol CC
GO:0005911 cell-cell junction CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006399 tRNA metabolic process BP
GO:0006412 translation BP
GO:0006418 tRNA aminoacylation for protein translation BP
GO:0006425 glutaminyl-tRNA aminoacylation BP
GO:0006429 leucyl-tRNA aminoacylation BP
GO:0006438 valyl-tRNA aminoacylation BP
GO:0006518 peptide metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006605 protein targeting BP
GO:0006622 protein targeting to lysosome BP
GO:0006623 protein targeting to vacuole BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006950 response to stress BP
GO:0007034 vacuolar transport BP
GO:0007041 lysosomal transport BP
GO:0007154 cell communication BP
GO:0008047 enzyme activator activity MF
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008361 regulation of cell size BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009267 cellular response to starvation BP
GO:0009506 plasmodesma CC
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009605 response to external stimulus BP
GO:0009719 response to endogenous stimulus BP
GO:0009892 negative regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009895 negative regulation of catabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010033 response to organic substance BP
GO:0010243 response to organonitrogen compound BP
GO:0010467 gene expression BP
GO:0010506 regulation of autophagy BP
GO:0010507 negative regulation of autophagy BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016604 nuclear body CC
GO:0016874 ligase activity MF
GO:0016875 ligase activity, forming carbon-oxygen bonds MF
GO:0017101 aminoacyl-tRNA synthetase multienzyme complex CC
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030054 cell junction CC
GO:0030234 enzyme regulator activity MF
GO:0030695 GTPase regulator activity MF
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031330 negative regulation of cellular catabolic process BP
GO:0031667 response to nutrient levels BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031669 cellular response to nutrient levels BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032006 regulation of TOR signaling BP
GO:0032008 positive regulation of TOR signaling BP
GO:0032535 regulation of cellular component size BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0033554 cellular response to stress BP
GO:0034198 cellular response to amino acid starvation BP
GO:0034613 protein localization BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042221 response to chemical BP
GO:0042594 response to starvation BP
GO:0042886 amide transport BP
GO:0043038 amino acid activation BP
GO:0043039 tRNA aminoacylation BP
GO:0043043 peptide biosynthetic process BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043087 regulation of GTPase activity BP
GO:0043170 macromolecule metabolic process BP
GO:0043200 response to amino acid BP
GO:0043201 response to leucine BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043436 oxoacid metabolic process BP
GO:0043547 positive regulation of GTPase activity BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0044093 positive regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046483 heterocycle metabolic process BP
GO:0046907 intracellular transport BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051336 regulation of hydrolase activity BP
GO:0051345 positive regulation of hydrolase activity BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051716 cellular response to stimulus BP
GO:0055044 symplast CC
GO:0060589 nucleoside-triphosphatase regulator activity MF
GO:0061462 protein localization to lysosome BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070727 cellular macromolecule localization BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071229 cellular response to acid chemical BP
GO:0071230 cellular response to amino acid stimulus BP
GO:0071233 cellular response to leucine BP
GO:0071310 cellular response to organic substance BP
GO:0071417 cellular response to organonitrogen compound BP
GO:0071495 cellular response to endogenous stimulus BP
GO:0071496 cellular response to external stimulus BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072665 protein localization to vacuole BP
GO:0072666 establishment of protein localization to vacuole BP
GO:0090066 regulation of anatomical structure size BP
GO:0090304 nucleic acid metabolic process BP
GO:0098772 molecular function regulator activity MF
GO:0140098 catalytic activity, acting on RNA MF
GO:0140101 catalytic activity, acting on a tRNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901698 response to nitrogen compound BP
GO:1901699 cellular response to nitrogen compound BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1902531 regulation of intracellular signal transduction BP
GO:1902533 positive regulation of intracellular signal transduction BP
GO:1903432 regulation of TORC1 signaling BP
GO:1904263 positive regulation of TORC1 signaling BP
GO:1990253 cellular response to leucine starvation BP
GO:1990928 response to amino acid starvation BP
KEGG Term Name Description
map00970 Aminoacyl-tRNA biosynthesis -