Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
MD17G1277100.v1.1
View in Genome Browser
Position
Chr17:33738642-33739679 (-)
1037bp
Gene Type
gene
Gene Description (Protein Product)
Heterogeneous nuclear ribonucleoprotein
Organism
Malus domestica
Also AS MD17G1118700AT3G13224

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
MD17G1278600.v1.1 Pre-mRNA-splicing factor ATP-dependent RNA
MD17G1282900.v1.1 helicase activity

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000578 embryonic axis specification BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0001667 ameboidal-type cell migration BP
GO:0002064 epithelial cell development BP
GO:0002065 columnar/cuboidal epithelial cell differentiation BP
GO:0002066 columnar/cuboidal epithelial cell development BP
GO:0003002 regionalization BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003697 single-stranded DNA binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0003730 mRNA 3'-UTR binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0006403 RNA localization BP
GO:0006417 regulation of translation BP
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006935 chemotaxis BP
GO:0007028 cytoplasm organization BP
GO:0007275 multicellular organism development BP
GO:0007276 gamete generation BP
GO:0007281 germ cell development BP
GO:0007292 female gamete generation BP
GO:0007297 follicle cell of egg chamber migration BP
GO:0007298 border follicle cell migration BP
GO:0007308 oocyte construction BP
GO:0007309 oocyte axis specification BP
GO:0007314 oocyte anterior/posterior axis specification BP
GO:0007315 pole plasm assembly BP
GO:0007316 pole plasm RNA localization BP
GO:0007319 negative regulation of oskar mRNA translation BP
GO:0007350 blastoderm segmentation BP
GO:0007351 tripartite regional subdivision BP
GO:0007389 pattern specification process BP
GO:0007399 nervous system development BP
GO:0007409 axonogenesis BP
GO:0007411 axon guidance BP
GO:0008150 biological_process BP
GO:0008298 intracellular mRNA localization BP
GO:0008358 maternal determination of anterior/posterior axis, embryo BP
GO:0008595 anterior/posterior axis specification, embryo BP
GO:0009605 response to external stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009798 axis specification BP
GO:0009880 embryonic pattern specification BP
GO:0009888 tissue development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009948 anterior/posterior axis specification BP
GO:0009952 anterior/posterior pattern specification BP
GO:0009987 cellular process BP
GO:0009994 oocyte differentiation BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010628 positive regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0010631 epithelial cell migration BP
GO:0016043 cellular component organization BP
GO:0016477 cell migration BP
GO:0017148 negative regulation of translation BP
GO:0019094 pole plasm mRNA localization BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019953 sexual reproduction BP
GO:0021700 developmental maturation BP
GO:0022008 neurogenesis BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0022607 cellular component assembly BP
GO:0030030 cell projection organization BP
GO:0030154 cell differentiation BP
GO:0030182 neuron differentiation BP
GO:0030707 follicle cell of egg chamber development BP
GO:0030855 epithelial cell differentiation BP
GO:0031175 neuron projection development BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032989 cellular component morphogenesis BP
GO:0032990 cell part morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0034248 regulation of amide metabolic process BP
GO:0034249 negative regulation of amide metabolic process BP
GO:0034250 positive regulation of amide metabolic process BP
GO:0035282 segmentation BP
GO:0035770 ribonucleoprotein granule CC
GO:0036464 cytoplasmic ribonucleoprotein granule CC
GO:0040011 locomotion BP
GO:0042221 response to chemical BP
GO:0042330 taxis BP
GO:0043186 P granule CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043484 regulation of RNA splicing BP
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0045451 pole plasm oskar mRNA localization BP
GO:0045495 pole plasm CC
GO:0045727 positive regulation of translation BP
GO:0046011 regulation of oskar mRNA translation BP
GO:0048024 regulation of mRNA splicing, via spliceosome BP
GO:0048027 mRNA 5'-UTR binding MF
GO:0048468 cell development BP
GO:0048469 cell maturation BP
GO:0048477 oogenesis BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048599 oocyte development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048666 neuron development BP
GO:0048667 cell morphogenesis involved in neuron differentiation BP
GO:0048699 generation of neurons BP
GO:0048731 system development BP
GO:0048812 neuron projection morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048858 cell projection morphogenesis BP
GO:0048869 cellular developmental process BP
GO:0048870 cell motility BP
GO:0050684 regulation of mRNA processing BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051641 cellular localization BP
GO:0051674 localization of cell BP
GO:0051704 obsolete multi-organism process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060293 germ plasm CC
GO:0060429 epithelium development BP
GO:0060810 intracellular mRNA localization involved in pattern specification process BP
GO:0060811 intracellular mRNA localization involved in anterior/posterior axis specification BP
GO:0061564 axon development BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070727 cellular macromolecule localization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090130 tissue migration BP
GO:0090132 epithelium migration BP
GO:0097159 organic cyclic compound binding MF
GO:0097485 neuron projection guidance BP
GO:0120036 plasma membrane bounded cell projection organization BP
GO:0120039 plasma membrane bounded cell projection morphogenesis BP
GO:1901363 heterocyclic compound binding MF
GO:1903311 regulation of mRNA metabolic process BP
GO:1990904 ribonucleoprotein complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.