PPGR - Gene Detail

Basic Information

Gene ID	Poman.13G005000.v1.1 View in Genome Browser
Position	Chr13:403843-405199 (+) 1356bp
Gene Type	gene
Gene Description (Protein Product)	zinc finger CCCH domain-containing protein
Organism	Populus nigra x maximowiczii
Also AS	Poman.13G005000AT5G26749Potri.013G004801.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Poman.14G104400.v1.1 RNA recognition motif

Poman.13G015700.v1.1 Pre-mRNA-splicing factor

Poman.15G004000.v1.1 Pre-mRNA-splicing factor

Target gene

Poman.01G020300.v1.1 Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Poman.01G025900.v1.1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Poman.01G027500.v1.1 Protein of unknown function (DUF568)

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005681	spliceosomal complex	CC
GO:0005689	U12-type spliceosomal complex	CC
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:1990904	ribonucleoprotein complex	CC