Basic Information
Gene ID
Position
hic_scaffold_22:58862542-58867093 (-)
4551bp
Gene Type
gene
Gene Description (Protein Product)
Survival motor neuron protein (SMN)
Organism
Also AS AT2G02570

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene39039 Splicing factor 3B subunit 10 (SF3b10)
PH02Gene35379 Splicing factor 3B subunit 10 (SF3b10)
PH02Gene34563 cwf21 domain
Regulatory gene
PH02Gene00304 Dof domain, zinc finger
PH02Gene00315 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
PH02Gene00562 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.